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John Mickett Senior Oceanographer jmickett@apl.washington.edu Phone 206-897-1795 |
Education
B.S. Marine Science, U.S. Coast Guard Academy, 1994
M.S. Physical Oceanography, University of Washington - Seattle, 2002
Ph.D. Physical Oceanography, University of Washington - Seattle, 2007
Projects
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Submesoscale Mixed-Layer Dynamics at a Mid-Latitude Oceanic Front SMILE: the Submesoscale MIxed-Layer Eddies experiment |
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1 Mar 2017
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This experiment is aimed at increasing our understanding of the role of lateral processes in mixed-layer dynamics through a series of ship surveys and Lagrangian array deployments. Instrument deployments and surveys target the upper ocean's adjustment to winter atmospheric forcing events in the North Pacific subtropical front, roughly 800 km north of Hawaii. |
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Tasmania Internal Tide Experiment The Tasmanian continental slope will be instrumented with a range of tools including moored profiler, chi-pods, CTDs, and gliders to understand the process, strength, and distribution of ocean mixing from breaking internal waves. |
27 Nov 2011
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Samoan Passage Abyssal Mixing The Samoan Passage, 5500 m beneath the sea surface, is one of the "choke points" in the abyssal circulation. A veritable river of Antarctic Bottom water flows through it on its way into the North Pacific. As it enters the constriction, substantial turbulence, hydraulic processes and internal waves must occur, which modify the water. The overall goal is to understand these deep processes and the way they impact the flow, and to develop a strategy for eventually monitoring the flow through the Passage. |
27 Sep 2011
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Videos
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Environmental Sample Processor: A Sentry for Toxic Algal Blooms off the Washington Coast An undersea robot that measures harmful algal species has been deployed by APL, UW, and NOAA researchers off the Washington coast near La Push. Algal bloom toxicity data are relayed to shore in near-real time and displayed through the NANOOS visualization system. The Environmental Sample Processor, or ESP, is taking measurements near the Juan de Fuca eddy, which is a known incubation site for toxic blooms that often travel toward coastal beaches, threatening fisheries and human health. |
22 Jun 2016
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ORCA Tracks the 'Blob' A 'blob' of very warm surface water developed in the northeastern Pacific Ocean in 20142015 and its influence extended to the inland waters of Puget Sound throughout the summer of 2015. The unprecedented conditions were tracked by the ORCA (Oceanic Remote Chemical Analyzer) buoy network an array of six heavily instrumented moored buoys in the Sound. ORCA data provided constant monitoring of evolving conditions and allowed scientists to warn of possible fish kill events in the oxygen-starved waters of Hood Canal well in advance. |
3 Nov 2015
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ArcticMix 2015 APL-UW physical oceanographers John Mickett and Mike Gregg joined SIO colleagues during September 2015 in the Beaufort Sea aboard the R/V Sikuliaq to measure upper ocean mixing that billows heat from depth to the surface. These mixing dynamics may be an important factor in hastening sea ice melt during summer and delaying freeze-up in the fall. |
14 Oct 2015
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Publications |
2000-present and while at APL-UW |
Taming turbulence closure in tidally driven simulations of coastal oceans and estuaries Harcourt, R.R., J.B. Mickett, and K.R. Prakash, "Taming turbulence closure in tidally driven simulations of coastal oceans and estuaries," Cont. Shelf Res., 296, doi:10.1016/j.csr.2025.105596, 2026. |
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1 Jan 2026 |
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A widespread prevalence of subsurface acoustic ducts impacting mid-frequency sound propagation was observed over the outer shelf and the continental slope during a field experiment in JulyAugust 2022 in the Pacific Northwest coastal ocean of North America. Simulations of the coastal shelf ocean using LiveOcean, a tidally driven operational model (MacCready et al., 2021), based upon a widely used variant of the Regional Ocean Modeling System (ROMS), were compared with observations of the thermohaline stratification layers responsible for the ducts, and found to have a nearly complete absence of these acoustic features due to excessive parametrized mixing. After implementing additional realistic constraints in the 'k-ε' second moment closure (SMC) to control instabilities in the turbulence mixing model with low background mixing, the source of instabilities was identified in a coding error for the default, third-order upstream advection of the turbulence parameters for TKE k and its dissipation epsilon, a longstanding and significant bug impacting mixing parametrization, and one also found in the older SMC 'Mellor-Yamada 2.5' mixing parametrization option in ROMS. With code improvements, LiveOcean was able to successfully simulate the production of observed subsurface acoustic ducts. The primary process for generating the ducts along the outer shelf involves the southward transport of low sound speed water during upwelling, combined with the cross-shelf displacement of higher sound speed water from offshore beneath this layer in bottom-driven Ekman transport. |
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Observations of mid-frequency sound propagation on the Washington continental shelf with a subsurface duct Tang, D., B.T. Hefner, G. Xu, E.I. Thorsos, R.R. Harcourt, J.B. Mickett, and K.R. Prakash, "Observations of mid-frequency sound propagation on the Washington continental shelf with a subsurface duct," J. Acoust. Soc. Am., 157, 4449-4460, doi:10.1121/10.0036890, 2025. |
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18 Jun 2025 |
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A joint oceanography and acoustics experiment was conducted on the Washington continental shelf in the summer of 2022. A towed system measured the in situ sound speed field along a 20 km track between acoustic sources and receivers. A weak but persistent subsurface duct was found with its sound speed minimum generally in the 50100 m–depth range. The duct exhibited range and time dependence due to the internal tide, internal waves, and possibly other oceanographic processes. Mid-frequency (3500 and 6000 Hz) transmission loss (TL) was measured at 10 and 20 km ranges. The subsurface duct has a 1013 dB effect on TL, depending on whether the sound source is inside or outside the duct. Measurements were also made using a bottom-mounted source, with transmissions every 3 min over several days. The sound intensity varies about 10 dB over a few minutes, while the scintillation index fluctuates between 0.5 and 1.5. Overall, it is found that mid-frequency sound propagation is variable at several temporal scales, ranging from minutes to hours, to days, or longer. Reducing the impact of these variabilities in acoustic applications would benefit from knowledge of the ocean processes at these different time scales. |
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Phenotypic plasticity and carryover effects in an ecologically important bivalve in response to changing environments Alma, L., P. McElhany, R.N. Crim, J.A. Newton, M. Maher, J.B. Mickett, and J.L. Padilla-Gamino, "Phenotypic plasticity and carryover effects in an ecologically important bivalve in response to changing environments," Front. Mar. Sci., 11, doi:10.3389/fmars.2024.1178507, 2024. |
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13 Mar 2024 |
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Phenotypic plasticity can improve an organism’s fitness when exposed to novel environmental conditions or stress associated with climate change. Our study analyzed spatiotemporal differences in phenotypic plasticity and offspring performance in Olympia oysters Ostrea lurida. This species is an ecosystem engineer and is of great interest for commercial and restoration aquaculture. We used a multidisciplinary approach to examine acute and long-term physiological differences in O. lurida in response to in situ oceanographic conditions in a dynamic inland sea. We outplanted oysters to different areas in Puget Sound, Washington, affixing cages to anchor lines of oceanographic monitoring buoys. This allowed us to couple high-resolution oceanographic data with organism's phenotypic response. To assess spatiotemporal differences in oyster physiological performance, we collected oysters after six-months and one year of acclimatization at four field sites. During each collection period we evaluated changes in shell properties, diet, metabolism, and reproduction. Adult growth, δ13°C and δ15°N isotopic signatures, and gametogenesis were affected by both seasonal and environmental conditions. In the winter, oysters from all sites had higher respiration rates when exposed to acute thermal stress, and lower respiration response to acute pH stress. Lipid content, sex ratio and shell strength were unchanged across locations. Offspring growth rates between sites at experimental temperature 20°C closely reflected parental growth rate patterns. Offspring survival was not correlated with growth rates suggesting different energetic trade-offs in oyster offspring. The metabolic response (respiration) of larvae reached its highest point at 20°C but sharply decreased at 25°C. This indicates that larvae are more sensitive to temperature stress, as adults did not exhibit a reduction in metabolic response at 25°C. By deploying genetically similar oysters into distinct environments and employing a wide range of physiological methodologies to examine performance and fitness, our results indicate that Olympia oysters exhibit a high degree of phenotypic plasticity and show evidence of parental carryover. |
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In The News
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Autonomous watercraft collects ocean samples Lincoln County Leader, Steve Card A state-of-the-art autonomous watercraft was launched from Newport’s Yaquina Bay on Tuesday, July 23, with a mission of collecting ocean water samples for the purpose of testing for water toxins. |
31 Jul 2024
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Ocean trash: What you need to know KCTS9/EarthFix , Ken Christensen Ocean currents carry man-made debris to remote corners of the planet—even to places mostly untouched by people. And that makes it difficult to clean up, as APL-UW's Senior Oceanographer John Mickett demonstrates during his recent sojourn to Vancouver Island, B.C. to recover a wayward research buoy. |
11 Dec 2017
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UW, NOAA deploy ocean robot to monitor harmful algal blooms off Washington coast UW News and Information, Hannah Hickey John Mickett, an oceanographer at the UW Applied Physics Laboratory, led the deployment of the new instrument with Stephanie Moore, a scientist at NOAA’s Northwest Fisheries Science Center, as part of a larger collaborative project. |
25 May 2016
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